The aim of plant breeding is to develop genetically superior cultivars that are adapted to specific environmental conditions and suitable for economic production in a commercial cropping system. These new, and more productive cultivars, are increasingly necessary to fulfil humankind's escalating needs for food, fibre and fuels.
The basic concept of varietal development is rather simple and involves three distinct operations:
The general philosophy underlying any breeding scheme is to maximize the probability of creating, and identifying, superior genotypes which will make successful new cultivars; in other words, genotypes that will contain all the desirable characteristics/traits necessary for use in a given production system, or at least offer a beneficial trade-off between key advantageous characteristics compared with undesirable ones.
Plant breeders can be categorized into two types. One group of plant breeders is employed within private companies, while the other group works in the public sector (e.g. government-funded research institutes or universities). Private sector and public sector breeders often have different approaches to the breeding process. Many of the differences that exist between public and private breeding programmes are related to the time available for variety release, types of cultivar developed, and priorities for traits in the selection process.
Plant breeders within the public sector are likely to have a number of responsibilities related to academic activities or extension services, in addition to those solely directed towards producing new varieties. Public sector breeders also play an additional, often unappreciated yet critical role: the attraction, training and development of a younger generation of men and women interested in plant breeding. As plant breeding is a combination of science and art, the personal component of training plant breeders at the graduate level is generally recognized as more relevant and significant than in most other areas of science.
Private sector plant breeders tend to have a more clearly defined goal: developing new cultivars and doing it as quickly as possible. In addition, many private breeding organizations are, or are associated with, biotechnology and/or agrochemical companies. As a result, varietal development may be designed to produce cultivars suitable for integration within a specific production system. In many countries, including the US, the ratio of private to public breeders has increased over time, particularly in those highest acreage crops such as maize, soybeans and canola, to mention just a few, as well as in crops with a high profit, such as tomato, pepper and lettuce, where private companies can gain greatest financial returns from seed or chemical sales.
Despite the apparently simple description of the breeding process given above, in reality plant breeding involves a multidisciplinary and long-term approach. Regardless of whether a breeding scheme is publicly or privately managed, a successful plant breeder will require knowledge in many (if not all) of the following subjects:
In summary, therefore, successful plant breeders need to be familiar with a range of scientific disciplines and management areas. It is not, however, necessary to be an expert or indeed an authority in all of these. However, greater knowledge of the basic science underlying the techniques employed, and of the plant species concerned, in terms of the biology, genetics, history and pathology, will increase the chances of a breeder succeeding in developing the type of cultivars most suitable for future exploitation.
Plant breeding consists of the iterative process of creation and manipulation of genetic variation within a crop species, and selection of desirable recombinants from within that variation. The process is therefore an intensification of a natural process, which has been ongoing since humans first appeared on earth. Plant breeders utilize and accelerate the evolutional process by directing it towards the increasing needs of humankind. As soon as humans began settled agriculture they effectively, albeit unconsciously, started plant breeding. In this section the main features of crop plant evolution will be covered briefly. The study of evolution is a vast and detailed subject in itself, and it will not be possible to cover more than an introduction to it in this book. Emphasis will be on the areas that are most important from a plant breeding standpoint.
Knowledge of the evolution of a plant species can be invaluable in breeding new cultivars. Studies of evolution can provide knowledge of the past changes in the genetic structure of the plant, an indication of what advances have already been achieved or might be made in the future, and help to identify relatives of the domesticated plant which could be used in interspecific or intergeneric hybridization to increase genetic diversity or introduce desirable characters not available within existing crops.
It is difficult to arrive at a firm understanding as to why humans became a race of farmers. Early humans are believed to have been foragers and later hunters. Why then did they become crop producers? Farming is believed to have started shortly after the last ice age, about 10,000 years ago. At that time there may have been a shortage of large animals for hunters to hunt, due to extinctions. Indeed, little is known about the order of agricultural developments. Did man domesticate animals and then domesticate crops to feed these beasts, or were crops first domesticated, and from this the early farmers found that they could benefit from specifically growing sufficient food to feed livestock? The earliest farmers may also have been fishermen who tended not to travel continually and were more settled in one region. In this latter case, perhaps the first farmers were women who took care of the farming operation while the males fished and hunted locally. It may simply have been that some ancient people became tired of nomadic travel in search of food, became bored with living in tents and opted for a quiet life on the farm! The answers are not known, although it can often be interesting to postulate why this change occurred. One misconception about the switch from hunting-gathering to farming is that farming was easier. It has been shown that gathering food requires considerably less energy than cultivating and growing crops. In addition, skeletal remains show that the initial farmers were smaller-framed and more prone to illness than their hunter-gatherer counterparts.
Regardless of the reason that caused mankind to cultivate crops, few would question that the beginning of farming aligned with the beginning of what most of us would consider civilization. Farming created communities, community structure and economies, group activities, enhanced trade and monetary systems, to name but a few. There is also little doubt that the total genetic change achieved by early farmers in moulding our modern crops has been far greater than that achieved by the scientific approaches that have been applied to plant breeding over the past century. Given that these early farmers were indeed cultivating crops, it is not surprising that they would propagate the most productive phenotypes, avoid the individuals with an off-taste or hard seeds, and choose not to harvest those plants that were spiny. Even today among peasant farmers there is a general trend to select the best plants for resowing the next year's crops. Early farmers may have used relatively sophisticated plant breeding techniques as there is evidence that some Native Americans have a long-established understanding of maintaining pure line cultivars of maize by growing seed crops that are isolated from their production fields.
Today's world food production is dominated by small grain cereal crops, with world production of maize (Zea Mays), rice (Oryza sativa) and wheat (Triticum spp.) each being just above 600 million metric tonnes annually (Figure 1.1). Major root crops include potato (Solanum tuberosum), cassava (Manihot esculenta), and sweet potato (Ipomoea batatas). Oilseed crops include soybean oil (Glycine max), oil palm (Elaeis guineensis), coconut palms (Cocos nucifera) and canola (Brassica napus). World production of fruit and vegetables are similar, where tomato (Lycopersicum esculentum), cabbage (Brassica oleracea) and onion (Allium spp.) are leading vegetable crops, whilst orange (Citrus sinensis), apple (Malus spp.), grape (Vitis spp.) and banana (Musa acuminata and M. balbisiana) predominate amongst the fruits. Many of these modern day crops were amongst the first propagated in agriculture.
Figure 1.1 World production of major crops.
Many studies have been made to determine the date when humans first cultivated particular crops. The accuracy of dating early remains of plant tissue has improved over the past half century with the use of radiocarbon methods. It should, however, be noted that well-preserved archaeological plant material has not proved easy to find. Many of the most significant findings have been from areas of arid environments (e.g. the eastern Mediterranean and Near East, New Mexico and Peru). These arid regions favour the preservation of plant tissue over time, and, not surprisingly, are the areas where most archaeological excavations have taken place. Conversely, there is a lower probability of finding well-preserved plant remains in regions with wetter and more humid climates. Therefore, archaeological information may provide an interesting, but surely incomplete, picture.
A summary of the approximate time of domestication and centre of origin of the world's major crop species, and a few recent crop additions, is presented in Table 1.1. It should be reiterated that many crop species have more than one region of origin, and that archaeological information is continually being updated. This table is therefore very much an oversimplification of a vast and complex picture.
Table 1.1 Estimated time of domestication and centre of origin of major crop species.
Crop | Length of time domesticated (years) | Possible region of origin |
Cereals | ||
Maize, Zea mays | 7,000 | Mexico, Central America |
Rice, Oryza sativa | 4,500 | Thailand, Southern China |
Wheat, Triticum spp. | 8,500 | Syria, Jordan, Israel, Iraq |
Barley, Hordeum vulgare | 9,000 | Syria, Jordan, Israel, Iraq |
Sorghum, Sorgum bicolor | 8,000 | Equatorial Africa |
Oilseeds | ||
Soybean, Glycine max | 2,000 | Northern China |
Oil palm, Elaeis guineensis | 9,000 | Central Africa |
Coconut palm, Cocos nucifera | 100 | Southern Asia |
Rapeseed, Brassica napus | 500 | Mediterranean Europe |
Sunflower, Helianthus annuus | 3,000 | Western United States |
Pulses | ||
Beans, Phaseolus spp. | 7,000 | Central America, Mexico |
Lentil, Lens culinaris | 7,000 | Syria, Jordan, Israel, Iraq |
Peas, Pisum sativum | 9,000 | Syria, Jordan, Israel, Iraq |
Root crops | ||
Potato, Solanum tuberosum | 7,000 | Peru |
Cassava, Manihot esculenta | 5,000 | Brazil, Mexico |
Sweet potato, Ipomoea batatas | 6,000 | South Central America |
Sugar beet, Beta vulgaris | 300 | Mediterranean Europe |
Vegetables | ||
Tomato, Lycopersicum esculentum | 3,000 | Western South America |
Cabbage, Brassica oleracea | 3,000 | Mediterranean Europe |
Onion, Allium spp. | 4,500 | Iran, Afghanistan, Pakistan |
Fruit | ||
Orange, Citrus sinensis | 9,000 | South-east Asia |
Apple, Malus spp. | 3,000 | Asia Minor, Central Asia |
Grape, Vitaceae spp. | 7,000 | Eastern Asia |
Banana, Musa acuminata, M. balbisiana | 4,500 | South-east Asia |
Others | ||
Cotton, Gossypium spp. | 4,500 | Central America, Brazil |
Coffee, Coffea spp. | 500 | West Ethiopia |
Rubber, Hevea brasiliensis | 200 | Brazil, Bolivia, Paraguay |
Alfalfa, Medicago sativa | 4,000 | Iran, Northern Pakistan |
Some of the earliest recorded information showing human domestication of plants comes from the region in the Near East known as the ‘Fertile Crescent’ (including the countries of Turkey, Syria, Israel, Iran and Iraq). Domestication of crops in this region surrounding the Tigris River began before 6000–7000 bc. Two of the world's leading cereal crops, einkorn and emmer wheat, as well as barley, have their centre of origin in this region. In addition, archaeological remains of onion, peas and lentils, dating back over 7,000 years have all been found within the Fertile Crescent. In the Americas, similar or slightly later dates of cultivation have been shown for beans and maize in central Mexico and Peru, and potato, cassava, and sweet potato in Peru, Chile and western South America. Sunflower (Helianthus) is the only major crop species with a centre of origin in North America, and indeed most other crops grown in the US and Canada evolved from other continents. Rice, soybean, sugarcane (Saccharum spp.), and the major fruit species (orange, apple and banana) were all first domesticated in China and the Asian continent a few millennia bc. Examination of archaeological remains shows that the dates of crop domestication in Africa were later, yet sorghum, oil palm and coffee are major world crops that have their centre of origin in this continent. Similarly, cabbage and a few other vegetable crops have their centre of origin in Europe. Given more research, it may be found that many more of today's crops were domesticated at even earlier periods.
Several crops of importance have been domesticated relatively recently. Sugar beet was not grown commercially in Europe until the 18th century, while rubber, oil palm and coconut palms were not domesticated until the end of the 19th century. The forage grasses, clovers, and oilseed rape (Brassica napus L. or B. rapa L.) are also recently domesticated crops, although some researchers would argue that these crops have yet to make the transition necessary to be classified as truly domesticated. New crops are still being recognized today. The advent of bioenergy crops has identified the oilseed crop camelina (Camelina spp.), and the biomass crop switchgrass (Panicum virgatum) as potential new crops species which have yet to be grown in large-scale commercialization.
A high proportion of today's major crops come from a very small subsample of possible plant species (Figure 1.1). It has been estimated that all the crop species grown today come from 38 families and 91 genera. This restriction in our plant-based diet is of concern because it potentially limits the consumption of the key nutrients supplied by plants and increases our dependence on animal products. Therefore, although the source of our present-day crops may be more diverse than we have shown, they still only represent a fraction of the total families and genera which have been estimated to exist within the angiosperms as a whole. Also, it should be noted that the sources of origin of these crops are spread over Europe, the Near East, Asia, Africa and America.
At some time in the past, each of our present-day crop species must have originated in one or more specific regions of the world. Originally it was thought that there were only 12 major centres of origin including the Near East, Mediterranean, Afghanistan, the Pacific Rim, China, Peru, Chile, Brazil/Paraguay and the US. More recent research has altered this original view, and it is now apparent that:
Overall, therefore, domesticated crops have originated from at least four of the six world continents (America, Europe, Africa and Asia). Australian aborigines remained hunter-gatherers and did not become farmers, and indeed farming in Australia is a relatively new activity started after western settlers arrived there. Not surprisingly, therefore, few of today's major agricultural crops originated in Australia; however, a recently domesticated crop (macadamia nuts) does have its origin in this continent.
All domesticated crops have been developed from wild, “weedy” ancestors. Early farmers modified wild species into modern-day crops through a process of genetic manipulation and selection. As a result these crop species have been sufficiently altered such that they can be considered to be domesticated. A definition of domestication has been given by the late Professor N.W. Simmonds as follows: “a plant population has been domesticated when it has been substantially altered from the wild state and certainly when it has been so altered to be unable to survive in the wild”. The first part of this definition can certainly be readily accepted for almost all modern-day agricultural crops, although we still propagate many crops (e.g. date palm) where the crop species are modified only slightly from ancient ancestors. It is not always possible to relate domestication to a lack of potential to survive in non-cultivated situations, since many commercially grown plants survive as volunteer weeds, or “escapes”, in either the same, or different, regions to those in which they are most commonly grown commercially. Nevertheless, their ability to compete against other plants, to withstand pests and/or diseases or to prosper in soils lacking mineral fertilizers or water is less than that observed in feral populations of the same plant species.
In the evolution of crop species we can often distinguish between natural and human selection. Natural selection tends to favour the predominance of the most adapted plant types, which manage to reproduce and disperse their progeny while tolerating the stress factors that prevail in a particular environment. Therefore natural selection favours plant phenotypes which have the greatest chance of survival, reproduction, and distribution of progeny. For example, wild cereal plants tend to have many small seeds at maturity and disperse their seed by shattering. These seeds are also likely to be attached to a strong awn to aid dispersal. Similarly, wild potato species produce many small tubers, have their tubers develop at the end of very long stolons (so that daughter plants do not occupy ground too close to the parent), and many have tubers with high levels of toxin, which discourage animals from eating them.
Human selection is the result of conscious decisions by a farmer or plant breeder to keep the progeny of a particular parent and discard others. Human selection is not usually directed to better survival in the wild (and indeed is often detrimental to survival outside cultivation). As an example, breeders have developed cereal cultivars which have fewer but larger seeds that do not shatter their seeds at maturity, and that have a non-persistent awn. Similarly, potato breeders have selected plants with fewer but larger tubers, shorter stolons, and with reduced levels of toxins in the tuber. Human selection has also produced crops that are more uniform in the expression of many of their characteristics. For example, they have selected seeds that all mature at the same time, with uniform germination, and fruits with uniform fruit size, colour and shape. In more recent times plant breeders' selection has tended to result in shorter plants, greater harvest index (the ratio of harvested product dry matter to the total dry matter produced to sustain such harvested product), and increased ease of harvest. In addition, plant breeders have been able to either reduce or extend growth cycles, or to develop photoperiod insensitive cultivars. A large number of our crop species that used to require harvest by hand can now be harvested by machine, mainly as a consequence of their small stature and uniform ripening.
There is of course a range of characteristics that would have been positively selected both by natural evolution and early plant breeders. These might include aspects of yield potential, tolerance to stress factors, and resistance to pests and diseases.
Around the turn of the 20th century the foundation of modern plant breeding was laid. Darwin's ideas on the differential survival of better adapted types were combined with those of Mendel on the genetic basis for the inheritance of plant characteristics. These two theories, combined with the research of scientists such as Weissman on the continuity of germplasm, the analyses of Johannsen resulting in the idea of genotype/phenotype relationships, and the rediscovery of Mendel's laws by Bateson, provided the scientific foundation of modern plant breeding.
There is little doubt that mankind has had a tremendous influence in moulding the morphology, plant types, end uses, and productivity of most crop species. Early farmers have taken wild, weedy plants and developed them into domesticated crops. The contribution of modern plant breeding efforts is not always clearly defined, nor can the achievements easily be measured.
Over the past century the world's human population has risen dramatically (Figure 1.2). World human population first exceeded one billion in 1804. It took a further 118 years of population expansion to double the world population. The human generation born after World War II (1945 to 1955) are often referred to as ‘baby boomers’. Interestingly, this is the first generation to witness the world's population double, from 3 billion to 6 billion individuals. It has further been estimated that within the next 20 years another 2 billion people will inhabit this earth, and that the Earth's population is predicted to reach over 9 billion people by 2050. At the time of writing, the seventh billion person has already arrived on planet Earth.
Figure 1.2 World population increase.
Population explosion, combined with mass urbanization, and proportionally fewer farmers, led to fears from world population specialists of worldwide hunger and famine. However, since the start of the ‘baby boom’ era, the yield of almost all of our major agricultural crops has increased as dramatically as the human population. Cereal and oilseed crop production have doubled since 1955 (Figure 1.3). Similar increases in vegetable production of 235%, fruit production of 28%, pulses by 51% and root crops by 50% have taken place in a 56 year time span. When world agricultural production is adjusted according to population increase (Figure 1.4), cereal production per capita has increased by 19%, and fruit, vegetable, and oilseed production per capita has increased by 57%, 146% and 200%, respectively, while production of root crops and pulses has reduced per head of capita in the world. However, these significant increases in food production cannot distract us from the overwhelming challenges lying ahead: if populations increase at the predicted rate, then it has been estimated that during the next 50 years agriculture will have to produce an equivalent amount of food to that produced during the last 10,000 years combined.
Figure 1.3 Total world crop production, 1955 and 2011.
Figure 1.4 Total world crop production per capita, 1955 and 2011.
These yield increases have been brought about by a combination of improved soil fertility (mainly due to additions of inorganic nitrogen fertilizers), improved chemical control of diseases and pests, better weed control through improved agronomic practices and herbicides, and better crop agronomic practices (e.g. correct plant densities), as well as by growing genetically improved cultivars.
So, how much of the improved yield can be attributed to the plant breeder (i.e. genetic change) and how much to better farming practices (i.e. environmental change)?
Yield increases of more than 100% have been found between single cross maize hybrid cultivars over the traditional open pollinated varieties. Many researchers have attributed this increase to the heterotic advantage of single crosses over homozygous inbred lines, and therefore conclude that the contribution of plant breeding must be very high. However, a complication arises when comparing single cross hybrids, where selection has been aimed at maximum hybrid productivity, against inbred lines which have been chosen for their combining ability rather than their own performance per se.
It might be suggested that the question could only be answered properly by growing a range of old and new varieties under identical agricultural conditions. Since most modern cultivars are dependent upon high levels of soil fertility and the application of herbicides, insecticides and fungicides, these would have to be used in the comparison trial. However, older cultivars were not grown under these conditions. Certainly, older cereal varieties tend to be taller than newer ones and are therefore more prone to lodging (flattening by wind or rain) when grown under conditions of high soil fertility. These considerations also show that cultivars are bred to best utilize the conditions under which they are to be cultivated. Nevertheless, several attempts to compare old and new cultivars have been undertaken in an attempt to determine the contribution of modern plant breeding to recent yield increases.
In one comparison carried out in the United Kingdom, winter wheat cultivars ranging in introduction date from 1908 to 1980 were simultaneously evaluated in field trials. In a similar experiment, spring barley cultivars ranging in introduction dates from 1880 to 1980 were compared. From the wheat cultivars available in the mid-1940's the grain yield from this study was about 5.7 t ha-1 but from the most recently introduced cultivars from 1980, yields were about 50% higher. There was a similar improvement in barley yield over the same period of about 30%. Therefore, considering these studies, we can reasonably conclude that breeding has contributed about half to the more-than-doubled cereal yield between 1946 and 1980.
In contrast, a study carried out in potatoes, with cultivars with dates of introduction from 1900 to 1982 (Figure 1.5), found that modern plant breeding had been responsible for a very small contribution to the more-than-doubled potato yield in the UK. This study in potato may, in part, reflect why ‘Russet Burbank’, introduced before 1900, still dominates potato production in the US, while the cultivar ‘Bintji’, introduced in 1910, remains a leading potato cultivar in the Netherlands.
Figure 1.5 Saleable yield of tubers from potato cultivars grown over a three-year period. Yield is related to the year that each cultivar was introduced into agriculture.
In conclusion, modern-day crops have shown significant yield increases over the past century. It would be mistaken to suggest that the major contributor to this increase has simply been a direct result of plant breeding. Increases have rather resulted from a combination of plant breeding and improvements in crop husbandry. For example, the increased use of inorganic nitrogen fertilizer has greatly increased wheat (and other cereal) yield. However, this was allied with the introduction of semi-dwarf and dwarf wheat cultivars that allowed high nitrogen fertilizer application without detrimental crop lodging. Without the addition of nitrogen fertilizers, would the dwarf wheat cultivars have been beneficial? Probably not. However, would high nitrogen fertilizer application have been possible without the introduction of dwarf wheat cultivars? It is difficult to know. The overall increase achieved to date has resulted from both genetic and non-genetic changes in agriculture. In addition, it has been shown that significant, consistent genetic progress has been achieved not only under well managed conditions, but also under stressful conditions such as drought tolerance.
In the future the same is likely to be true: that the next leap in crop productivity will result from a marked change in agronomic practice, plus the introduction of plant types that can best utilize this husbandry change. What changes will these be? It is impossible to know with any certainty. Recent moves to reduced/no-tillage systems may be one option that could be considered, and that would require specific cultivars to maximize performance under these situations.
Similarly, advances in biotechnology may result in the development of crops with markedly different performances and adaptations to those available today. Introduction of these crop types may necessitate a major (or minor) change in crop husbandry to utilize the potential of these genetically modified crops.