Annotated Bibliography

PREFACE

Browne, Janet. 1996. Charles Darwin: A biography, volume 1—Voyaging. Princeton, NJ: Princeton University Press.

Browne, Janet. 2003. Charles Darwin: A biography, volume 2—The power of place. Princeton, NJ: Princeton University Press.
The canonical biography of Charles Darwin: The story of his life and the formation of his scientific ideas. Volume 2 concentrates on his work after the return from the Beagle voyage.

Ghiselin, Michael T. 2003. The triumph of the Darwinian method. Mineola, NY: Dover Publications.
Demonstrates the unity of thought that pervades Darwin’s books, from first to last.

CHAPTER 1: THE QUEEN’S ORANG-UTAN

Allison, A. C. 2009. Genetic control of resistance to human malaria. Current Opinion in Immunology 21:499–505.
The complexity of the evolved response to a single disease.

Bakewell, M. A., Shi, P., and Zhang, J. 2007. More genes underwent positive selection in chimpanzee evolution than in human evolution. Proceedings of the National Academy of Sciences, USA 104:7489–7494.
Slower evolution in the human than in the chimpanzee line.

Fisher, S. E., and Scharff, C. 2009. FOXP2 as a molecular window into speech and language. Trends in Genetics 25:166–177.
Mutations in a developmental gene as possible key to the origin of language.

Gibbons, A. 2009. Ardipithecus unveiled. Science 326:36–40.
Introduction
to a series of linked papers on the anatomy, ecology, and behaviour of a 4.4-million-year-old human ancestor.

Gibbs, R. A., Rogers, J., Katze, M. G., et al. 2007. Evolutionary and biomedical insights from the rhesus macaque genome. Science 316:222–234.
Some surprising differences between us and a moderately close relative.

Go, Y., and Niimura, Y. 2008. Similar numbers but different repertoires of olfactory receptor genes in humans and chimpanzees. Molecular Biology and Evolution 25:1897–1907.
Decay and decline in the human compared with the chimpanzee line.

Herrmann, E., Call, J., Hernández-Lloreda, M. V., Hare, B., and Tomasello, T. 2007. Humans have evolved specialized skills of social cognition: The cultural intelligence hypothesis. Science 317:1360–1365.
Homo sapiens as more than a shaved monkey.

Ingram, C. J. E., Mulcare, C. A., Itan, Y., Thomas, M. G., and Swallow, D. M. 2009. Lactose digestion and the evolutionary genetics of lactase persistence. Human Genetics 124:579–591.
Evolution of milk-drinking in cattle-herding societies.

Lao, O., de Gruijter, J. M., van Duijn, K., Navarro, A., and Kayser, M. 2007. Signatures of positive selection in genes associated with human skin pigmentation as revealed from analyses of single nucleotide polymorphisms. Annals of Human Genetics 71:354–369.
Indirect evidence of natural selection on the human genome.

Li, J. Z., Absher, D. M., Tang, H., Southwick, A. M., Casto, A. M., Ramachandran, S.,
Cann, H. M., Barsh, G. S., Feldman, M., Cavalli-Sforza, L. L., and Myers, R. M. 2008. Worldwide human relationships inferred from genome-wide patterns of variation. Science 319:1100–1104.
The human genome diversity project and overall levels of human genetic variation.

Marques-Bonet, T., Ryder, O. A., and Eichler, E. E. 2009. Sequencing primate genomes:
What have we learned? Annual Review of Genomics and Human Genetics 10:355–386.
Ourselves and our relatives compared.

Reed, D. L., Light, J. E., Allen, J. M., and Kirchman, J. J. 2007. Pair of lice lost or parasites regained: The evolutionary history of anthropoid primate lice. BioMedCentral Biology 5:7.
The intimate secrets of body hair and the invention of clothes.

Rossiianov, K. 2002. Beyond species: Il’ya Ivanov and his experiments on cross-breeding humans with anthropoid apes. Science in Context 15:277–316.
A failed attempt to use biology to ask what makes us human.

Sturm, R. A. 2009. Molecular genetics of human pigmentation diversity. Human Molecular Genetics 18(R1):R9–R17.
Genetics and evolution of skin, hair, and eye colour.

Tattersall, I., and Schwartz, J. H. 2009. Evolution of the genus Homo. Annual Review of
Earth and Planetary Sciences
37:67–92.
The tangled tale of our relatively recent ancestors and supposed ancestors.

Varki, A., Geschwind, D. H., and Eichler, E. E. 2008. Explaining human uniqueness: Genome interactions with environment, behaviour, and culture. Nature Reviews Genetics 9:749–763.
What makes us different from apes, in brain and body.

CHAPTER 2: THE GREEN TYRANNOSAURS

Bauer, U., Bohn, H. F., and Federle, W. 2008. Harmless nectar source or deadly trap: Nepenthes pitchers are activated by rain, condensation, and nectar. Proceedings of the Royal Society of London, Series B 275:259–265.
Trapping strategies of pitcher plants.

Clement, L. W., Köppen, C. W., Brand, W. A., and Heil, M. 2008. Strategies of a parasite of the ant-Acacia mutualism. Behavioral Ecology and Sociobiology 26:953–962.
Fine balance of mutualism versus parasitism in the ant-tree interaction.

Eilenberg, E., Pnini-Cohen, S., Schuster, S., Movtchan, A., and Zilberstein, A. 2006. Isolation and characterization of chitinase genes from pitchers of the carnivorous plant Nepenthes khasiana. Journal of Experimental Botany 57:2775–2784.
How botanical carnivores digest their prey.

Ellison, A. M., and Gotelli, N. J. 2009. Energetics and the evolution of carnivorous plants—Darwin’s “most wonderful plants in the world.” Journal of Experimental Botany 60:19–42.
The costs and benefits of eating insects.

Forterre, Y., Skotheim, J. M., Dumais, J., and Mahadevan, L. 2005. How the Venus flytrap snaps. Nature 433:421–425.
Biophysics of the wonderful plant.

Frederickson, M. E., Greene, M. J., and Gordon, D. M. 2005. ‘Devil’s gardens’ bedevilled by ants. Nature 437:495–496.
How mutualist ants on trees destroy neighbouring vegetation.

Gibson, T. C., and Waller, D. M. 2009. Evolving Darwin’s ‘most wonderful’ plant: Ecological steps to a snap-trap. New Phytologist 183:575–587.
The evolution of a most unlikely structure, the Venus flytrap.

Gorb, E., Haas, K., Henrich, A., Enders, S., Barbakadze, N., and Gorb, S. 2005. Composite structure of the crystalline epicuticular wax layer of the slippery zone in the pitchers of the carnivorous plant Nepenthes alata and its effect on insect attachment. Journal of Experimental Biology 208:4651–4662.
The complexity of the pitfall in a pitcher plant.

Heil, M., and McKey, D. 2003. Protective ant-plant interactions as model systems in ecological and evolutionary research. Annual Review of Ecology, Evolution, and Systematics 34:425–453.
Review of the mutualist and agonistic interactions between ants and trees.

Juniper, B. E., Robins, R. J., and Joel, D. M. 1989. The carnivorous plants. London: Academic.
Botany, anatomy, and taxonomy of many species of insect-eaters.

Karagatzides, J. D., and Ellison, A. M. 2009. Construction costs, payback times, and the leaf economics of carnivorous plants. American Journal of Botany 96:1612–1619.
When to eat insects, and when to give it up.

Murza, G. L., Heaver, J. R., and Davis, A. R. 2006. Minor pollinator-prey conflict in the carnivorous plant Drosera anglica. Plant Ecology 184:43–52.
Divergence of interest between insect and plant: food item or sexual aid?

Palmer, T. M., and Brody, A. K. 2007. Mutualism as reciprocal exploitation: African plant-ants defend foliar but not reproductive structures. Ecology 88:3004–3011.
Fine balance of advantage between ants and trees.

Raaijmakers, J. M., Paulitz, T. C., Steinberg, C., Alabouvette, C., and MoënneLoccoz, Y. 2009. The rhizosphere: A playground and battlefield for soil-borne pathogens and beneficial microorganisms. Plant and Soil 321:341–361.
Complexity of interaction between plants and nitrogen-fixing insects.

CHAPTER 3: SHOCK AND AWE

Blasi, G., Hariri, A. R., Alce, G., Taurisano, P., Sambataro, F., Das, S., Bertolino, A.,
Weinberger, D. R., and Mattay, V. S. 2009. Preferential amygdala reactivity to the negative assessment of neutral faces. Biological Psychiatry 66:847–853.
Brain scans and response to subjective feelings when looking at faces.

Canli, T., Ferri, J., and Duman, E. A. 2009. Genetics of emotion regulation. Neuroscience 164:43–54.
Individual variation in emotional response within the normal range.

Davidson, R. J. 2003. Darwin and the neural bases of emotion and affective style. Annals of the New York Academy of Sciences 1000:316–336.
The Expression of the Emotions put into twenty-first century context.

Frith, C. D., and Frith, U. 2007. Social cognition in humans. Current Biology 17:R724–R732.
Importance of understanding messages of mood and intention for society.

Gaspar, A. 2006. Universals and individuality in facial behavior—past and future of an evolutionary perspective. Acta Ethologica 9:1–14.
Parallels between the facial expressions of primates and humans.

Haberman, J., and Whitney, D. 2007. Rapid extraction of mean emotion and gender from sets of faces. Current Biology 17:R751–R753.
Ability to sense average emotions of a group of people from a mere glimpse.

Hare, B. 2007. From nonhuman to human mind: What changed and why? Current Directions in Psychological Science 16:60–66.
Social skills and emotional response in dogs, apes, and humans compared.

Hariri, A. R., and Holmes, A. 2006. Genetics of emotional regulation: The role of the serotonin transporter in neural function. Trends in Cognitive Sciences 10:182–186.
Individual differences in efficiency of nerve transmission alter anxiety and mood.

Kanwisher, N., and Yovel, G. 2006. The fusiform face area: A cortical region specialized for the perception of faces. Philosophical Transactions of the Royal Society of London, Series B 361:2109–2128.
Brain area lights up in specific response to face; effects of age, race, and experience.

Kendrick, K. M. 2006. The neurobiology of social recognition, attraction, and bonding. Philosophical Transactions of the Royal Society of London, Series B 361:2057–2059.
Nervous and hormonal correlates of response to familiar and unfamiliar faces.

Levy, S. E., Mandell, D. S., and Schultz, R. T. 2009. Autism. The Lancet 374:1627–1638.
Review
of symptoms, incidence, and genetics of autism and related disorders.

Miklosi, A. 2007. Dog Behaviour, Evolution, and Cognition. New York: Oxford University Press.
Social skills of dogs: response to owner versus strangers, ability to sense mood.

Mitani, J. C. 2009. Cooperation and competition in chimpanzees: Current understanding and future challenges. Evolutionary Anthropology 18:215–227.
The emotional universe of the chimpanzee: anger and suspicion versus cooperation.

Niedenthal, P. M. 2007. Embodying emotion. Science 316:1002–1009.
Emotion as told in body language and facial expression.

Palermo, R., and Rhodes, G. 2007. Are you always on my mind? A review of how face perception and attention interact. Neuropsychologia 45:75–92.
Familiarity of faces and speed of perception; disorders of face recognition.

Phelps, E. A. 2006. Emotion and cognition: Insights from studies of the human amygdala. Annual Review of Psychology 57:27–53.
The base of the brain and response to fearful or angry expressions.

Russell, J. A., Bachorowski, J. A., and Fernández-Dols, J. M. 2003. Facial and vocal expressions of emotion. Annual Review of Psychology 54:329–349.
Ambiguity of expressions such as laughter; balance between signal and reception.

Spady, T. C., and Ostrander, E. A. 2008. Canine behavioral genetics: Pointing out the phenotypes and herding up the genes. American Journal of Human Genetics 82: 10–18.
Crosses between breeds and the genetics of behavioural and emotional differences.

Sugita, Y. 2009. Innate face processing. Current Opinion in Neurobiology 19:39–44.
Innate ability to see faces in very young primates.

Tate, A. J., Fischer, H., Leigh, A. E., and Kendrick, K. M. 2006. Behavioural and neurophysiological evidence for face identity and face emotion processing in animals. Philosophical Transactions of the Royal Society of London, Series B 361:2155–2172.
Apes and even sheep able to recognize emotions shown on faces.

CHAPTER 4: THE TRIUMPH OF THE WELL BRED

Barrett, S. C. H. 2003. Mating strategies in flowering plants: The outcrossing-selfing paradigm and beyond. Philosophical Transactions of the Royal Society of London, Series B 358:991–1004.
More flexibility in mating strategy by plant species than imagined by Darwin.

Bittles, A. H. 2008. A community genetics perspective on consanguineous marriage. Community Genetics 11:324–330.
Incidence and health effects of inbreeding and effects on clinical genetics services.

Charlesworth, D., and Willis, J. H. 2009. The genetics of inbreeding depression. Nature Reviews Genetics 10:783–796.
How inbreeding reduces diversity and exposes hidden genetic damage.

Colantonio, S. E., Lasker, G. W., Kaplan, B. A., and Fuster, V. 2003. Use of surname models in human population biology: A review of recent developments. Human Biology 75:785–807.
Isonymy—marriage of those with shared surnames—as an indication of inbreeding.

Helgason, A., Pálsson, S., Gudbjartsson, D., Kristjánsson, D., and Stefánsson, K. 2008. An association between the kinship and fertility of human couples. Science 319:813–816.
Unexpected reduction in fertility in later generations after cousin marriage.

Ilmonen, P., Stundner, G., Thoss, M., and Penn, D. J. 2009. Females prefer the scent of outbred males: Good-genes-as-heterozygosity? BioMedCentral Evolutionary Biology 9:104.
Female mice can assess inbreeding of males by scent and avoid inbreds.

Jorde, L. 2001. Consanguinity and prereproductive mortality in the Utah Mormon population. Human Heredity 52:61–65.
Consistency of effects of cousin marriage over a century in a well-studied group.

Keller, L. F., and Waller, D. M. 2002. Inbreeding effects in wild populations. Trends in Ecology and Evolution 17:230–241.
Similar reductions in fitness of inbred offspring in birds, mammals, and plants.

King, T. E., Ballereau, S. J., Schürer, K. E., and Jobling, M. A. 2006. Genetic signatures of coancestry within surnames. Current Biology 16:384–388.
Shared rare surnames mean shared genes; proof of Darwin’s ideas on isonymy.

Lieberman, D., Tooby, J., and Cosmides, L. 2007. The architecture of human kin detection. Nature 445:727–732.
Older children less sexually interested in their younger siblings than vice versa.

Milinski, M. 2006. The major histocompatibility complex, sexual selection, and mate choice. Annual Review of Ecology, Evolution, and Systematics 37:159–186.
Outbreeding increases immunological diversity and disease resistance: mate choice.

Owens, S. J., and Miller, R. 2009. Cross- and self-fertilization of plants—Darwin’s experiments and what we know now. Botanical Journal of the Linnean Society 161:357–395.
Darwin’s crossing experiments reinterpreted in the light of modern science.

Pattison, J. E. 2004. A comparison of inbreeding rates in India, Japan, Europe, and China. HOMO—Journal of Comparative Human Biology 55:113–128.
Historical inbreeding influenced by political turmoil and movement.

Rudan, I., Campbell, H., Carothers, A. D., Hastie, N. D., and Wright, A. F. 2006. Contribution of consanguinity to polygenic and multifactorial diseases. Nature Genetics 11:1224–1225.
Inbred offspring are more susceptible to a wide range of diseases.

Snowdon, C. T., Ziegler, T. E., Schultz-Darken, N. J., and Ferris, C. F. 2006. Social odours, sexual arousal, and pairbonding in primates. Philosophical Transactions of the Royal Society of London, Series B 361:2079–2089.
Assessment of kinship by scent and inbreeding avoidance in apes.

Weller, S. G. 2009. The different forms of flowers—What have we learned since Darwin? Botanical Journal of the Linnean Society 160:249–261.
How primrose pins and thrums grew into today’s science of sexual choice.

CHAPTER 5: THE DOMESTIC APE

Bell, C. G., Walley, A. J., and Froguel, P. 2005. The genetics of human obesity. Nature Reviews Genetics 6:221–227.
The cost of abundant food to the most domesticated primate.

Brown, T. A., Jones, M. K., Powell, W., and Allerby, R. G. 2008. The complex origins of domesticated crops in the Fertile Crescent. Trends in Ecology and Evolution 24:103–109.
Domestication as a more protracted and diffuse process than once thought.

Doebley, J. F., Gaut, B. S., and Smith, B. D. 2006. The molecular genetics of crop domestication. Cell 127:1309–1321.
The maize genome and the great reorganisation involved in domestication.

Gotherstrom, A., Anderung, C., Hellborg, L., Elburg, R., Smith, C., Bradley, D. G., and Ellegren, H. 2005. Cattle domestication in the Near East was followed by hybridization with aurochs bulls in Europe. Proceedings of the Royal Society of London, Series B 272:2345–2350.
Continued crossing of farm cows with wild bulls during early cattle domestication.

Lia, V. V., Confalonieri, V. A., Ratto, N., Hernandez, J. A. C., Alzogaray, A. M. M., Poggio, L., and Brown, T. A. 2007. Microsatellite typing of ancient maize: Insights into the history of agriculture in southern South America. Proceedings of the Royal Society of London, Series B 274:545–554.
Tracking the geography of domestication of maize in South America.

Ostrander, O. A., and Wayne, R. K. 2005. The canine genome. Genome Research 15:1706–1716.
The genetics of the most domesticated of all animals.

Parker, H. G., Kim, L. V., Sutter, N. B., Carlson, S., Lorentzen, T. D., Malek, T. B.,
Johnson, G. S., DeFrance, H. B., Ostrander, E. A., and Kruglyak, L. 2004. Genetic structure of the purebred domestic dog. Science 304:1160–1164.
Extensive genetic divergence among dog breeds after only a few generations.

Purugganan, M. D., and Fuller, D. Q. 2009. The nature of selection during plant domestication. Nature 457:843–848.
Parallel changes in seed size, shattering ability, and growth habit in various crops.

Saetre, P. 2004. From wild wolf to domestic dog: Gene expression changes in the brain. Molecular Brain Research 126:198–206.
Dogs have very different patterns of gene activity in the brain following domestication.

Sampietro, M. L., Lao, O., Caramelli, D., Lari, M., Pou, R., Marti, R., Bertranpetit, J., and Lalueza-Fox, C. 2007. Palaeogenetic evidence supports a dual model of Neolithic spreading into Europe. Proceedings of the Royal Society of London, Series B 274:2161–2167.
Complexity of interaction of early farmers with European hunter-gatherers.

Trut, L., Oskina, I., and Kharlamova, A. 2009. Animal evolution during domestication: The domesticated fox as a model. BioEssays 31:349–360.
Changes in behaviour, appearance, and gene expression in domesticated foxes.

Vaughan, D. A., Balazs, E., and Heslop-Harrison, J. S. 2007. From crop domestication to super-domestication. Annals of Botany 100:893–901.
Origin of maize and other crops; potential for genetic manipulation in future.

CHAPTER 6: THE THINKING PLANT

Baldwin, I. T. 2006. Volatile signaling in plant-plant interactions: “Talking trees” in the genomics era. Science 311:812–816.
Chemical communication by scent among plants after damage.

Braam, J. 2005. In touch: Plant responses to mechanical stimuli. New Phytologist 165:373–389.
The touch genes in plants: effect on growth form, movement of leaves, and more.

Chen, M., Chory, J., and Fankhauser, C. 2004. Light signal transduction in higher plants. Annual Review of Genetics 38:87–117.
The complexity of response by plants to colour, intensity, and timing of light.

Franklin, K. A., and Whitelam, G. C. 2005. Phytochromes and shade-avoidance responses in plants. Annals of Botany 96:169–175.
How shaded plants struggle towards the light.

Gianoli, E. 2004. Evolution of a climbing habit promotes diversification in flowering plants. Proceedings of the Royal Society of London, Series B 271:2011–2015.
Climbers find a new way of life and explode into variety.

Goriely, A., and Neukirch, S. 2006. Mechanics of climbing and attachment in twining plants. Physical Review Letters 97, 184302.
The laws of physics determine how climbing plants conquer their supporters.

Harsh, P., Bais, T. L., Weir, L. G., Perry, S. G., and Vivanco, J. M. 2006. The role of root exudates in rhizosphere interactions with plants and other organisms. Annual Review of Plant Biology 57:233–266.
Plant roots hunting for nitrogen and other nutriments.

Karban, R. 2008. Plant behaviour and communication. Ecology Letters 11:727–739.
Parallels between plant and animal foraging, defense, and communication.

Kiss, J. Z. 2006. Up, down, and all around: How plants sense and respond to environmental stimuli. Proceedings of the National Academy of Sciences, USA 103:829–830.
Using mutants to disentangle the sensory world of plants.

Krings, M., Kerp, H., Taylor, T. N., and Taylor, E. L. 2003. How Paleozoic vines and lianas got off the ground: On scrambling and climbing Carboniferous–early Permian pteridosperms. Botanical Review 69:204–224.
Incidence of the climbing habit in coal-measure forests.

Palmieri, M., and Kiss, J. Z. 2006. The role of plastids in gravitropism. Advances in Photosynthesis and Respiration 23:507–525.
Parallel between the mammalian ear and gravity sensing organs in plants.

Quint, M., and Gray, W. M. 2006. Auxin signalling. Current Opinion in Plant Biology 9:448–453.
Review of the plant hormone auxin and its role in movement and growth.

Runyon, J. B., Mescher, M. C., and De Moraes, C. M. 2006. Volatile chemical cues guide host location and host selection by parasitic plants. Science 313:1964–1967.
Ability of dodder plants to sniff out their lush prey and avoid less desirable victims.

Santner, A., and Estelle, M. 2009. Recent advances and emerging trends in plant hormone signalling. Nature 459:1071–1078.
The molecular biology of auxins and other plant hormones.

Schnitzer, S. A., and Bongers, F. 2002. The ecology of lianas and their role in forests. Trends in Ecology and Evolution 17:223–231.
Biomass of lianas in forests; ability to exploit light patches and damage support.

Telewski, F. W. 2006. A unified hypothesis of mechanoperception. American Journal of Botany 93:1466–1476.
A sensory network within plant cells acts as a transducer for touch perception.

Trewavas, A. 2003. Aspects of plant intelligence. Annals of Botany 92:1–20.
The case for plants having a mental capacity analogous to that of animals.

Vandenbussche, F., Pierik, R., Millenaar, F. F., Voesenek, L. A. C. J., and van der Straeten, D. 2005. Reaching out of the shade. Current Opinion in Plant Biology 8:462–468.
Plants use balance of red and infrared light to sense shading by other leaves.

Whippo, C. W., and Hangarter, R. P. 2009. The “sensational” power of movement in plants: A Darwinian system for studying the evolution of behavior. American Journal of Botany 96:2115–2127.
Darwin and plant movement: his experiments seen in the context of today’s science.

CHAPTER 7: A PERFECT FOWL

Anderson, D. T. 1994. Barnacles: Structure, function, development and evolution. London: Chapman and Hall.
The standard work on the taxonomy, anatomy, and distribution of barnacles.

Angelini, D. R., and Kaufman, T. C. 2005. Comparative developmental genetics and the evolution of arthropod body plans. Annual Review of Genetics 39:95–119.
Homeoboxes and the evolution of segments in insects, crabs, and barnacles.

Christensen-Dalsgaard, J., and Carr, C. E. 2008. Evolution of a sensory novelty: Tympanic ears and the associated neural processing. Brain Research Bulletin 75:365–370.
How marine wave-detecting cells were hijacked for use in the mammalian inner ear.

Damen, W. G. M. 2007. Evolutionary conservation and divergence of the segmentation process in arthropods. Developmental Dynamics 236:1379–1391.
Comparison of insect and marine developmental genes reveals deep similarity.

Deutsch, J. S., and Mouchel-Vielh, E. 2003. Hox genes and the crustacean body plan. BioEssays 25:878–887.
Variation in the numbers of legs and segments depends on homeobox evolution.

Géant, E., Mouchel-Vielh, E., Coutanceau, J. P., Ozouf-Costaz, C., and Deutsch, J. S. 2006. Are cirripedia hopeful monsters? Cytogenetic approach and evidence for a Hox gene cluster in the cirripede crustacean Sacculina carcini. Development, Genes, and Evolution 216:443–449.
How loss of a set of developmental genes allowed barnacles to diversify.

Glenner, H., and Hebsgaard, M. B. 2006. Phylogeny and evolution of life history strategies of the parasitic barnacles (Crustacea, Cirripedia, Rhizocephala). Molecular Phylogenetics and Evolution 41:528–538.
Evolution of the macabre lifestyle of the barnacle parasites of crabs.

Lemons, D., and McGinnis, W. 2006. Genomic evolution of Hox gene clusters. Science 313:1918–1923.
The Hox developmental genes put into the mammalian and insect context.

Perez-Losada, M., Harp, M., Hoeg, J. T., Achituv, Y., Jones, D., Watanabe, H., and Crandall, K. A. 2007. The tempo and mode of barnacle evolution. Molecular Phylogenetics and Evolution 46:328–346.
Molecular trees in barnacles show hidden complexity and convergent evolution.

Shubin, N. 2008. Your inner fish: A journey into the 3.5-billion-year history of the human body. New York: Pantheon.
The imprint of our marine past in our own body plan.

Vonk, F. J., and Richardson, M. K. 2008. Developmental biology: Serpent clocks tick faster. Nature 454:282–283.
How snakes multiply their somites to generate many vertebrae.

CHAPTER 8: WHERE THE BEE SNIFFS

Anderson, B., Johnson, S. D., and Carbutt, C. 2005. Exploitation of a specialized mutualism by a deceptive orchid. American Journal of Botany 92:1342–1349.
How a nectar-free mimic in South Africa parasitizes its more generous neighbours.

Arditti, J. 1992. Fundamentals of Orchid Biology. New York: John Wiley and Sons.
Exhaustive account of orchid taxonomy and pollination mechanisms.

Bascompte, J. 2007. Plant-animal mutualistic networks: The architecture of biodiversity. Annual Review of Ecology, Evolution, and Systematics 38:567–593.
The ancient and conflict-ridden tie between insects and plants, orchids included.

Chittka, L., and Raine, N. E. 2006. Recognition of flowers by pollinators. Current Opinion in Plant Biology 9:428–435.
How the insect visual system is attuned to—and can be fooled by—floral signals.

Fenster, C. B., Armbruster, W. S., Wilson, P., Dudash, M. R., and Thomson, J. D. 2004. Pollination syndromes and floral specialization. Annual Review of Ecology, Evolution, and Systematics 35:375–403.
Evolution of shared flower specialisations in unrelated groups of plants.

Friis, E. M., Pedersen, K. R., and Crane, P. R. 2005. When Earth started blooming: Insights from the fossil record. Current Opinion in Plant Biology 8:5–12.
The origin of flowers and the evolutionary explosion of blooms and pollinators.

Galliot, C., Stuurman, J., and Kuhlemeier, C. 2006. The genetic dissection of floral pollination syndromes. Current Opinion in Plant Biology 9:78–82.
Pollinator shifts as a force driving the origin of new species of plants.

Jersakova, J., Johnson, S. D., and Kindlmann, P. 2006. Mechanisms and evolution of deceptive pollination in orchids. Biological Reviews of the Cambridge Philosophical Society 81:219–235.
The infinite dishonesty of orchids in search of a cheap pollinator.

Raguso, R. A. 2004. Flowers as sensory billboards: Progress towards an integrated understanding of floral advertisement. Current Opinion in Plant Biology 7:434–440.
The complexity of floral signals from colour to scent; honesty and dishonesty.

Ramírez, S. R., Gravendeel, B., Singer, R. B., Marshall, C. R., and Pierce, N. E. 2007. Dating the origin of the Orchidaceae from a fossil orchid with its pollinator. Nature 448:1042–1045.
An ancient pollinator preserved in amber pushes back the early history of orchids.

Specht, C. D., and Bartlett, M. E. 2009. Flower evolution: The origin and subsequent diversification of the angiosperm flower. Annual Review of Ecology, Evolution, and Systematics 40:217–243.
Pollinator conflict as a driving force in the evolution of modern flowers.

Wade, M. J. 2007. The co-evolutionary genetics of ecological communities. Nature Reviews Genetics 8:185–195.
Pervasive conflicts between pollinators and flowers, hosts and parasites, and more.

Whittall, J. B., and Hodges, S. A. 2007. Pollinator shifts drive increasingly long nectar spurs in columbine flowers. Nature 447:706–710.
An evolutionary race between host and pollinator drives both to extremes.

Yam, T. W., Arditti, J., and Cameron, K. M. 2009. “The orchids have been a splendid sport”—An alternative look at Charles Darwin’s contribution to orchid biology. American Journal of Botany 96:2128–2154.
How Darwin’s ideas underpin the latest research in orchid biology.

CHAPTER 9: THE WORMS CRAWL IN

Ashbee, P., and Jewell, P. 1998. The experimental earthworks revisited. Antiquity 72:485–504.
Artificial burial mound on downland rapidly disturbed by earthworms.

Bardgett, R. D. 2005. The biology of soil: A community and ecosystem approach. Oxford: Oxford University Press.
Review of earthworms as ecological engineers in a complex ecosystem.

Briones, M. J. I., Ostle, N. J., and Pearce, T. G. 2008. Stable isotopes reveal that the calciferous gland of earthworms is a CO2-fixing organ. Soil Biology and Biochemistry 40:554–557.
Ability of worms to extract carbon from air extends role in soil improvement.

Brown, G. G., Feller, C., Blanchart, E., Deleporte, P., and Chernyanskii, S. S. 2003. With Darwin, earthworms turn intelligent and become human friends. Pedobiologia 47:924–933.
Changes in attitudes towards earthworms before and after Darwin’s day.

Canti, M. G. 2003. Earthworm activity and archaeological stratigraphy: A review of products and processes. Journal of Archaeological Science 30:135–148.
How worm activity disturbs archaeological sites and blurs the record of history.

Edwards, C. A., ed. 2004. Earthworm ecology. 2nd ed. Boca Raton, FL: CRC Press.
Exhaustive review of ecology, physiology, behaviour, and distribution of worms.

Evans, C. 2009. Small agencies and great consequences: Darwin’s archaeology. Antiquity 83:475–488.
How archaeological digs showed the power of earthworms to inter.

Gabet, E. J., Reichman, O. J., and Seabloom, E. W. 2003. The effects of bioturbation on soil processes and sediment transport. Annual Review of Earth and Planetary Sciences 31:249–273.
Mites, mice, elephants, roots, and more assist earthworms in disturbing the soil.

Glaser, B. 2006. Prehistorically modified soils of central Amazonia: A model for sustainable agriculture in the twenty-first century. Philosophical Transactions of the Royal Society of London, Series B 362:187–196.
The terra preta soils of South America as a model for use of biochar in farming.

Johnson, D. L., Domier, J. E. J., and Johnson, D. N. 2005. Reflections on the nature of soil and its biomantle. Annals of the Association of American Geographers 95:11–31.
The relative roles of chemistry and biology in making and improving soil.

Meysman, F. J. R., Middelburg, J. J., and Heip, C. H. R. 2006. Bioturbation: A fresh look at Darwin’s last idea. Trends in Ecology and Evolution 21:688–695.
How disturbing the surface led to the Cambrian Explosion of life.

Montgomery, D. R. 2007. Dirt: The erosion of civilizations. Berkeley: University of California Press.
How neglect of the soil led to the collapse of empires, from prehistory to the present.

Roulet, N., and Moore, T. M. 2006. Environmental chemistry: Browning the waters. Nature 444:283–284.
Recent carbon loss from British soils.

Stuerzenbaum, S. R., Andre, J., Kille, P., and Morgan, A. J. 2009. Earthworm genomes, genes, and proteins: The (re)discovery of Darwin’s worms. Proceedings of the Royal Society Biological Sciences, Series B 276:789–797.
The taxonomy, ecology, distribution, and evolution of the world’s worms.

Velando, A., Eiroa, J., and Domínguez, J. 2008. Brainless but not clueless: Earthworms boost their ejaculates when they detect fecund nonvirgin partners. Proceedings of the Royal Society of London, Series B 275:1067–1072.
Hermaphrodite worms assess mating history of partners before inserting sperm.

Wilkinson, K., Tyler, A., Davidson, D., and Grieve, I. 2006. Quantifying the threat to archaeological sites from the erosion of cultivated soil. Antiquity 309:658–670.
Patterns of loss of radioactive fallout reveal extent of disturbance by ploughs.

ENVOI: DARWIN’S ISLAND

Ashmole, P., and Ashmole, M. J. 2000. St. Helena and Ascension Island: A natural history. Oswestry, England: Anthony Nelson.
A tale of extinction and attempts at conservation on Darwin’s penultimate island.

Causton, C. E., Peck, S. B., Sinclair, B. J., Roque-Albelo, L., Hodgson, C. J., and Landry, B. 2006. Alien insects: Threats and implications for conservation of Galapagos Islands. Annals of the Entomological Society of America 99:121–143.
One of the most important threats to Galapagos wildlife.

Ellison, A. M., Gotelli, N. J., Brewer, J. S., Knietel, J., Miller, T. E., Cochran-Stafira, L., Worley, A. C., and Zamora, R. 2003. Carnivorous plants as model ecological systems. Advances in Ecological Research 33:1–74.
Ecology and extinction risk of endangered insectivorous plants.

Ghazoul, J. 2005. Buzziness as usual? Questioning the global pollination crisis. Trends in Ecology and Evolution 20:367–373.
Opposed views on the fate of bees in the modern agricultural world.

Goulson, D. 2003. Effects of introduced bees on native ecosystems. Annual Review of Ecology, Evolution, and Systematics 34:1–26.
Positive and negative effects of the global spread of European bees.

Hendrix, P. F. 2006. Biological invasions belowground: Earthworms as invasive species. Biological Invasions 8:1201–1204.
Earthworms away from home as pests and agents of ecological change.

King, T. E., Parkin, E. J., Swinfield, G., Cruciani, F., Scozzari, R., Rosa, A., Lim, S. K., Xue, Y., Tyler-Smith, C., and Jobling, M. A. 2007. Africans in Yorkshire? The deepestrooting clade of the Y phylogeny within an English genealogy. European Journal of Human Genetics 15:288–293.
Forgotten English outbreeding: a black Yorkshireman with many white descendants.

Kull, T., Kindlmann, P., Hutchings, M. J., and Primac, R. B. 2006. Conservation biology of orchids: Introduction to the special Issue. Biological Conservation 129:1–3.
The global plight of orchids and some possible solutions.

Lasker, G. W., and Mascie-Taylor, C. G. N. 2001. The genetic structure of English villages: Surname diversity changes between 1976 and 1997. Annals of Human Biology 28:546–553.
Increased outbreeding in the late twentieth century as shown by surname patterns.

Moore, L. T., McEvoy, B., Cape, E., Simms, K., and Bradley, D. G. 2006. A Y chromosome signature of hegemony in Gaelic Ireland. American Journal of Human Genetics 78:334–338.
Ancient differences in male mating success in Ireland leave traces today.

Prentis, P. J., Wilson, J. R. U., Dormontt, E. E., Richardson, D. M., and Lowe, A. J. 2008. Adaptive evolution in invasive species. Trends in Plant Science 13:288–294.
How invading plants such as the Oxford Ragwort evolve in their new homes.

Richardson, D. M., and Pysek, P. 2006. Plant invasions: Merging the concepts of species invasiveness and community invasibility. Progress in Physical Geography 30:409–431.
How some plants invade, and how some places can keep invaders out.

Scapoli, C., Mamolini, E., Carrieri, A., Rodriguez-Larralde, A., and Barrai, A. 2007. Surnames in western Europe: A comparison of the subcontinental populations through isonymy. Theoretical Population Biology 71:37–48.
High outbreeding in industrial countries measured by shared surnames on marriage.

Skirbekk, V. 2008. Fertility trends by social status. Demographic Research 18:145–180.
Reduction in variation in family size with increasing social equality.

Wade, M. J., and Shuster, S. M. 2004. Estimating the strength of sexual selection from Y-chromosome and mitochondrial DNA diversity. Evolution 58:1613–1616.
How the strength of sexual selection in humans has decreased over the centuries.