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Gut and Weight
Alang, N. and Kelly, C. (2015). “Weight gain after fecal microbiota transplantation.” Infectious Diseases Society of America. 2. 1.
Byrne, C., et al. (2015). “The role of short chain fatty acids in appetite regulation and energy homeostasis.” International Journal of Obesity. 39. 9. 1331–1338.
Cho, I. et al. (2012). “Antibiotics in early life alter the murine colonic microbiome and adiposity.” Nature. 488. 7413. 621–626.
Graham, C., Mullen, A., Whelen, K. (2015). “Obesity and the gastrointestinal microbiota: a review of associations and mechanisms.” Nutrition Reviews. DOI: http://dx.doi.org/10.1093/nutrit/nuv004.
Higgins, J. (2014). “Resistant starch and energy balance: impact on weight loss and maintenance.” Critical Reviews in Food Science and Nutrition. 54. 9.
Keenan, M., et al. (2015). “Role of resistant starch in improving gut health, adiposity, and insulin resistance.” American Society for Nutrition. 6. 198–205.
Zarrinpar, A., et al. (2014). “Diets and feeding pattern affect the diurnal dynamics of the gut microbiome.” Cell Metabolism. 20. 1006–1017.
Gut and Mood/Brain/Sleep
De Palma, G., et al. (2014). “The microbiota-gut-brain axis in gastrointestinal disorders: stressed bugs, stressed brain or both?” J Physiol. 592. 14. 2989–2997.
Galland, L. (2014). “The gut microbiome and the brain.” J Med Food. 17. 12. 1261–1272.
Kaplan, J., et al. (2015). “The emerging field of nutritional mental health: inflammation, the microbiome, oxidative stress, and mitochondrial function.” Clinical Psychological Science. 3. 6. 964–980.
Magnusson, R., et al. (2015). “Relationships between diet-related changes in the gut microbiome and cognitive flexibility.” Neuroscience. 6. 300. 128–40.
Tillisch, K., et al. (2013). “Consumption of fermented milk product with probiotic modulates brain activity.” Gastroenterology. 144. 7. 1394–1401.
Gut and Immune System
Hao, Q., et al. (2011). “Probiotics for preventing acute upper respiratory tract infections.” Cochrane Review.
Khosravi, A., et al. (2014). “Gut microbiota promote hematopoiesis to control bacterial infection.” Cell Host & Microbe. 15. 3. 374–381.
Velasquez-Manoff, M. (2015). “Gut microbiome. The peace-keepers.” Nature. 518. 11.
Gut Health and Autoimmune Disorders (Including but Not limited to: Type 1 Diabetes, Crohn’s Disease, Ulcerative Colitis, Celiac Disease, Multiple Sclerosis, Rheumatoid Arthritis, Psoriasis)
Campbell, A. (2014). Review article: “Autoimmunity and the gut.” Autoimmune Diseases. DOI: 10.1155/2014/152428
Fasano, A. (2012). “Leaky gut and autoimmune diseases.” Clinic Rev Allerg Immunol. DOI: 10.1007/s12016-011-8291-x.
Matozzi, C. (2012). “Psoriasis. New insight about pathogenesis, role of barrier organ integrity, NRL/CATERPILLER family genes and microbial flora.” The Journal of Dermatology. 39. 1–9.
Gut and Skin Conditions (Rosacea, Eczema, Acne)
Bowie, W. and Logan, A. (2011). Review: “Acne vulgaris, probiotics and the gut-brain-skin axis – back to the future?” Gut Pathogens. 3. 1.
Mankowska-Wierzbicka, D., et al. (2015). “The microbiome and dermatological diseases.” Postepy Hig Med Dosw. 69. 978–985.
Gut and Type 2 Diabetes and Insulin Resistance
Hulston, C., et al. (2015). “Probiotic supplementation prevents high-fat, overfeeding-induced insulin resistance in human subjects.” British Journal of Nutrition. 113. 596–602.
Leeman, M., Östman, E., Björck, I. (2005). “Vinegar dressing and cold storage of potatoes lowers postprandial glycaemic and insulinaemic responses in healthy subjects.” European Journal of Clinical Nutrition. 59. 1266–1271.
Suez, J. et al. (2014). “Artificial sweeteners induce glucose intolerance by altering the gut microbiota.” Nature. DOI: 10.1038/nautre13793.
Gut and Autism
Mulle, J., Sharp, W., Cubells, J. (2013). “The gut microbiome: a new frontier in autism research.” Curr Psychiatry Rep. 15. 2. 337.
Gut and Parkinson’s
Scheperjans, F., et al. (2014). “Gut microbiota are related to Parkinson’s disease and clinical phenotype.” Movement Disorders. 30. 3. 350–358.
Bredesen, D. (2014). “Reversal of cognitive decline.” Aging. 6. 9. 707–717.
Bredesen, D. (2016). “Reversal of cognitive decline in Alzheimer’s disease.” Aging. DOI: 10.18632/aging.100981.
Hill, J., et al. (2014). “Pathogenic microbes, the microbiome, and Alzheimer’s disease (AD).” Aging Neurosci. 6. 127.
Gut, Diet, and Cancer
Bultman, S. (2014). “Emerging roles of the microbiome in cancer.” Carcinogenesis. 35. 2. 249–255.
Cao, Y., et al. (2015). “Light to moderate intake of alcohol, drinking patterns, and risk of cancer: results from two prospective U.S. cohort studies.” BMJ. DOI: 10.1136/bmj.h4238
Oyebode, O., et al. (2014). “Fruit and vegetable consumption and all-cause, cancer and CVD mortality: Analysis of Health Survey for England Data.” Journal of Epidemiol Community Health. DOI: 10.1136/jech-2013-203500.
Smyth, A., et al. (2015). “Alcohol consumption and cardiovascular disease, cancer, injury, admission to hospital, and mortality: a prospective cohort study.” The Lancet. DOI: 10.1016/S0140-6736(15)00235-4
Gut and Asthma
Huang, Y. and Boushey, H. (2015). “The microbiome in asthma.” J Allergy Clin Immunol. 135. 1. 25–30.
Gut and Bone Health
Yang, Y., et al. (2005). “Long-term proton pump inhibitor therapy and risk of hip fracture.” JAMA. 296. 24. 2947–2953.
Collins, S. (2014). “A role for the gut microbiota in IBS.” Nature Reviews Gastroenterology & Hepatology. 11. 497–505.
Pozuelo, M., et al. (2015). “Reduction of butyrate and methane-producing microorganisms in patients with irritable bowel syndrome.” Scientific Reports. 5. 12693.
Volta, U. (2014). “Gluten-free diet in the management of patients with irritable bowel syndrome, fibromyalgia, and lymphocytic enteritis.” Arthritis Research & Therapy. 16. 505.
The Microbiome and Dysbiosis
Beirão, E., et al. (2014). Review article: “Does the change on gastrointestinal tract microbiome affect host?” The Brazilian Journal of Infectious Diseases. 18. 6. 660–663.
Blaser, M. (2014). “The microbiome revolution.” The Journal of Clinical Investigation. 124. 10.
Clemente, J., et al. (2012). “The impact of the gut microbiota on human health: an integrative view.” Cell. 148.
De Felippo, C., et al. (2010). “Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa.” PNAS. 107. 33.
Flint, H. (2012). “The impact of nutrition on the human microbiome.” Nutrition Reviews. 70. S10–S13.
Flint, H. and Scott, K. (2012). “The role of the gut microbiota in nutrition and health.” Nature. 9. 577–589.
Guarner, F. (2015). Review article: “The gut microbiome: What do we know?” Clinical Liver Disease. 5. 4.
Haenen, D., et al. (2013). “A diet high in resistant starch modulates microbiota composition, SCFA concentrations, and gene expression in pig intestine.” The Journal of Nutrition. DOI: 10.3945/ jn.112.16967.
Human Microbiome Project Consortium. (2012). “Structure, function, and diversity of the healthy human microbiome.” Nature. 486. 207–214.
Johnson, D. (2013). “Fecal transplantation for C difficile: A how-to guide.” http://www.medscape.com/viewarticle/779307
Khoruts, A., (2010). “Changes in the composition of the human fecal microbiome after bacteriotherapy for recurrent Clostridium difficile-associated diarrhea.” Journal of Clinical Gastroenterology. 44. 354–360.
Le Chatelier, E., et al. (2013). “Richness of human gut microbiome correlates with metabolic markers.” Nature. 500. 541–546.
Leach, J. (2013). Interviewed by Chris Kresser. Revolution Health Radio Show. “You are what your bacteria eat: the importance of feeding your microbiome – with Jeff Leach.” November 20.
Lepage, P., et al. (2012). “A metagenomic insight into our gut’s microbiome.” Gut. 62. 1. 146–158.
Obregon-Tito, A. (2015). “Subsistence strategies in traditional societies distinguish gut microbiomes.” Nature Communications. DOI: 10.1038/ ncomms7505.
Shreiner, A., Kao, J., Young, V. (2015). “The gut microbiome in health and in disease.” Current Opinion in Gastroenterology. 31. 1. 69–75.
Sun, J. (2014). Commentary. “Artificial sweeteners are not sweet to the gut microbiome.” Genes & Diseases. 1. 130–131.
Ursell, L., et al. (2012). “The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites.” Journal of Allergy and Clinical Immunology. 129. 5. 1204–1208.
Van Nood, E. et al. (2013). “Duodenal infusion of donor feces for recurrent Clostridium difficile.” New England Journal of Medicine. 368. 407–415.
Van Nood, E., et al. (2014). “Fecal microbiota transplantation facts and controversies.” Current Opinion in Gastroenterology. 30. 1. 34–39.
Vassallo, G., et al. (2015). Review article: “Alcohol and gut microbiota. The possible role of gut microbiota modulation in the treatment of alcoholic liver disease.” Ailment Pharmacol Ther. 41. 10. 917–927.
Walker, A., et al. (2010). “Dominant and diet-responsive groups of bacteria within the human colonic microbiota.” The ISME Journal. 5. 220–230.
Impaired Intestinal Permeability (“Leaky Gut”)
Bischoff, S., et al. (2014). “Intestinal permeability – a new target for disease prevention and therapy.” BMC Gastroenterology. 14. 189.
Brown, K., et al. (2012). “Diet-induced dysbiosis of the intestinal microbiota and the effects on immunity and disease.” Nutrients. 4. 8. 1095–1119.
Moreira, A., et al. (2012). Review article: “Influence of a high-fat diet on gut microbiota, intestinal permeability, and metabolic endotoxaemia.” British Journal of Nutrition. 108. 801–809.
Shen, W., et al. (2014). “Influence of dietary fat on intestinal microbes, inflammation, barrier function, and metabolic outcomes.” Journal of Nutritional Biochemistry. 25. 270–280.
Teixeira, T., et al. (2012). “Potential mechanisms for the emerging link between obesity and increased intestinal permeability.” Nutrition Research. 32. 637–647.
The Latest on Cardiovascular Disease and Diet
Chowdhury, R., et al. (2014). “Association of dietary, circulating, and supplement fatty acids with coronary risk: a systematic review and meta-analysis.” Ann Intern Med. DOI: 10.7326/ M13-1788.
De Souza, R., et al. (2015). “Intake of saturated and trans unsaturated fatty acids and risk of all cause mortality, cardiovascular disease, and type 2 diabetes: systematic review and meta-analysis of observational studies.” BMJ. DOI: 10.1136/bmj.h3978
Estruch, R., et al. (PREDIMED Study Investigators). (2013). “Primary prevention of cardiovascular disease with a Mediterranean Diet.” The New England Journal of Medicine. 368. 1279–1290.
Harcombe, Z., et al. (2015). “Evidence from randomized controlled trials did not support the introduction of dietary fat guidelines in 1977 and 1983: a systematic review and meta-analysis.” BMJ Open Heart. DOI: 10.1136/openhrt-2014-000196.
Malhotra, A. (2013). “Saturated fat is not the major issue.” BMJ. DOI: 10.1136/bmj.f6340
Malhotra, A., DiNicolantonio, J., Capewell, S. (2015). Editorial: “It is time to stop counting calories, and time instead to promote dietary changes that substantially and rapidly reduce cardiovascular morbidity and mortality.” BMJ Open Heart. DOI: 10.1136/openhrt-2015-000273
Smith, R. (2014). “Are some diets mass murder?” BMJ. DOI: 10.1136/ bmj.g7654
Celiac Disease and Non-Celiac Gluten Sensitivity
Catassi, C., et al. (2013). Review. “Non-celiac gluten sensitivity: the new frontier of gluten-related disorders.” Nutrients. 5. 3839–3853.
Farrell, R. and Kelly, C. (2002). Review article: “Celiac sprue.” The New England Journal of Medicine. 346. 3.
Marild, K., et al. (2012). “Pregnancy outcome and risk of celiac disease in offspring: A nationwide case-control study.” Gastroenterology. 142. 1. 29–45.
Rostami, K. (2012). “A patient’s journey: Non-celiac gluten sensitivity.” BMJ. DOI: 10.1136/bmj.e7982.
Sapone, A., et al. (2012). “Spectrum of gluten-related disorders: consensus on new nomenclature and classification.” BMC Medicine. 10. 13.
Benefits of a Hunter-Gatherer Diet
Manheimer, E., et al. (2015). “Paleolithic nutrition for metabolic syndrome: systematic review and meta-analysis.” The American Journal of Clinical Nutrition. 102. 4. 922–932.
Benefits of a Mediterranean Diet
Crous-Bou, M., et al. (2014). “Mediterranean diet and telomere length in Nurses’ Health Study: population based cohort study.” BMJ. DOI: 10.1136/bmj.g6674
Estruch, R., et al. (PREDIMED Study Investigators). (2013). “Primary prevention of cardiovascular disease with a Mediterranean Diet.” The New England Journal of Medicine. 368. 1279–1290.
Petyaev, I. and Bashmakov, Y. (2012). “Could cheese be the missing piece in the French paradox puzzle?” Medical Hypotheses. DOI: 10.1016/j.mehy. 2012 .08.018
Simopoulos, A. (2001). “The Mediterranean diets: what is so special about the diet of Greece? The scientific evidence.” The Journal of Nutrition. 131. 11.
Sofi, F., et al. (2013). Review article: “Mediterranean diet and health.” Biofactors. 39. 4. 335–342.
Other Articles of Interest
Cassidy, A., et al. (2015). “Higher dietary anthocyanin and flavonol intakes are associated with anti-inflammatory effects in a population of U.S. adults.” American Journal of Clinical Nutrition. 102. 1. 172–181.
Daskalaki, D., et al. (2009). “Evaluation of phenolic compounds degradation in virgin olive oil during storage and heating.” Journal of Food and Nutrition Research. 48. 1. 31–41.
Hale, L., Chichlowski, M., Trinh, C., Greer, P. (2010). “Dietary supplementation with fresh pineapple juice decreases inflammation and colonic neoplasia in IL-10-deficient mice with colitis.” Inflammatory Bowel Diseases. DOI: 10.1002/ibd.21320
Nobel, Y., et al. (2015). “Metabolic and metagenomic outcomes from early- life pulsed antibiotic treatment.” Nature Communications. 6. 7486.
Pérez-Jiménez, J., et al. (2010). “Identification of the 100 richest dietary sources of polyphenols: an application of the Phenol-Explorer database.” European Journal of Clinical Nutrition. 64. 112–120.
Santos, C., et al. (2013). Review article: “Effect of cooking on olive oil quality attributes.” Food Research International. 54. 2. 2016–2024.
Velasco, J. and Dobarganes, C. (2002). “Oxidative stability of virgin olive oil.” European Journal of Lipid Science. 104. 661–676.