aardvark, 105
adaptation
by competitive interactions, 139, 223–25
by ecological divergence, 76, 109
by genetic recombination, 63–64
by natural selection (see natural selection)
Africa
south of the Sahara, 104–107, 311
agriculture, 69, 87, 127, 261, 265, 286, 288, 292–94, 296, 305, 312
algae, 10–11, 20–21, 60–61, 63, 161–62, 172, 175, 178, 182–83, 207, 214, 280, 281
Amazon basin, 22, 78–79, 100, 266
amphibians
reproduction, 184
Andes. See under mountains
Angiosperms. See flowering plants
Animalia (kingdom), 9
animals
development of, 39–40, 208, 210
marine (see marine life)
Antarctica, 26, 45, 55, 89, 162, 264
anthropomorphism, 233
ants, 31, 135, 148–49, 159, 160, 191, 198, 229–231, 254–55, 287
Appalachian (mountains). See under mountains
Archaea (Archaebacteria), 54–57, 224, 234, 278
Arctic
animal life, 92
Ocean, 311
vegetation, 89, 91–92, 112, 117, 135
arthropods, 41
Arthur, W. Brian, 234, 293, 299
asteroid bombardment, 13, 171, 195–96, 283
atmosphere, 15, 49, 178, 280, 299
ATP (adenosine triphosphate), 204
Australia, 30, 91, 98, 99, 103–104, 108, 120, 122, 123–24, 138, 139, 157, 195, 217, 227, 259, 260, 270
Australopithecus afarensis, 236, 244, 248
Bacteria, 9, 21, 29, 44, 68, 148, 163–64, 167, 172–73, 178, 204–208, 214, 226, 278–80
commensal (symbiotic), 52, 160, 233
Eubacteria, 54
extremophiles, 55–57, 225, 234
beetles, 52, 78–79, 149, 152, 154, 156, 181, 191, 304. See also chapter 1
biocides. See pesticides
altitude effects, 81–82, 118, 128–30
and climate variability, 114–15
geography of (see chapters 4 and 5)
grazing effects, 153
higher plants (see floristics)
history of (see paleontology)
hotspots (see hotspots)
maintenance of (see chapter 6)
marine versus terrestrial, 20–22
biogeography
Africa, south of the Sahara, 104–107, 135–36
endemism patterns, 111, 137–38
vicariance, 122
See also islands; plate tectonics; Wallace's line; zoogeographic realms
Africa south of the Sahara, 104–107
Northern boreal forests, 93-94
Northern Eurasian biomes, 96–97
Northern temperate zone, 94–96
bipedality, 193, 248–50, 286, 292
numbers, 25
ratite, 122
Borneo, 102
brains
body mass ratios, 243
energy demands, 244
expansion in humans, 242
Brazil, 101
brussels sprouts (Brassica oleracea), 149
butterflies. See Lepidoptera
California, 95–96, 98, 112, 133–34
Cambrian explosion, 174–76, 194, 197, 207, 215, 217, 281–82
carbon dioxide, 15–16, 175, 205, 232
in global warming, 264, 297, 310–11
in photosynthesis, 49, 179, 190, 279–80
cells
eukaryotic (see Eukaryota)
dynamics, 59
replication, 278
Cenozoic, 197
cereal grains, 85, 186, 191, 266, 269
chimpanzees, 18, 74, 104, 212–13, 248, 254–55
China, 97, 124–25, 133, 270–72, 288, 297, 302, 304, 307
chloroplasts, 60, 207, 234, 280
chromosomes, 50–51, 59–66, 77, 187, 207, 213, 214, 219, 278, 280
change and speciation, 84
cicadas, periodical, 32
cichlids. See fish
climate change, 253, 260, 289, 311, 313
competition
accelerating over time, 202, 223–25, 227, 234
animals (versus plants), 198
in human evolution, 254–57, 268
in natural selection, 87, 223–25, 235
See also niche; predation
complexity
advances over time, 58, 189, 197, 200, 201, 202–203, 206, 210, 213, 228–31, 234–35, 238, 239, 243, 275, 282, 286, 305
concept and definition, 7, 202–203, 234
and cooperation, 162–64, 229–30, 286–87
in human brain expansion, 246
and multicellularity, 67
and new platforms, 58, 59, 206, 234, 268–69, 277, 294
in technology, 292
See also predation
continental drift. See plate tectonics
endemic species, 118
Cyanobacteria (blue-green algae), 10–11, 20–21, 48–49, 173, 175, 178, 205, 207, 279–80
Darwin, Charles, 69–70, 86, 166, 169, 203–204, 233, 237
Darwin's finches, 72
DDT (pesticide). See pesticides
death (in complex organisms), 208–209
deserts, 10, 106, 112, 144, 217
development
as self-organization, 211
dinosaurs, 19, 193–97, 199, 226, 231, 283–84
diploid cells and organisms, 63–64, 66, 84, 183, 185, 214–15, 218
Dipterocarpaceae, 102
diseases. See pathogens
disjunction. See under biogeography
dispersal
by ants, 135
by humans, 166
disruption and biodiversity, 149–50
disseminules, plant, 123, 137, 145, 165, 177
diversity. See biodiversity
division (taxonomic), 9, 40, 74
division of labor, 208, 229–30, 253, 257, 269
DNA (deoxyribonucleic acid)
as genetic information, 18, 39, 45–46, 48, 50–52, 54, 71–73, 83, 115, 122, 136, 160, 162, 176, 182, 206, 219, 237–38, 258–59, 278
“junk,” 213
in replication, 46, 48, 62, 220
See also RNA
dormancy, 167
Earth
axial tilt, 12, 14, 92, 171, 201
history (see paleontology)
ecology
environmental gradients, 81–82, 112–16, 118, 136
food webs, 148
keystone species, 159
ecoregions (see chapter 4)
Ediacaran biota, 173
and lineage history, 137
endosymbiosis, 59–60, 164, 202, 206, 207, 234
energy
competition for, 223
harvesting (see photosynthesis)
from hydrogen fusion, 299–300, 315
and increasing complexity, 223, 244
in metabolism, 20, 59, 244, 279
and technology, 273–75, 293–94
epiphytes, 42, 117–18, 129–31, 137, 144
Erwin, Terry, 36
Ethiopia, 31, 82, 105–107, 134, 244, 302
Eubacteria. See Bacteria
Eukaryota, 55, 56–63, 67–68, 175, 202, 206–207, 221, 278, 280, 281, 287, 293
evapotranspiration, plant, 91, 113, 128
evolution
and contingency/convergence, 217
epic of, 17
and escalation, 225
by pioneering effect, 224
as a tree/trellis, 52
See also intelligent design; natural selection
extinction, 27, 87, 105, 115, 165, 226–27, 240, 260, 276
major extinction events, 194–96, 197–98, 283
extremophiles. See under Bacteria
faunal realms. See zoogeography
ferns, 43, 78, 107, 118, 123–24, 128, 129, 144, 184–85, 191, 198, 215
fire
and human advance, 256–57, 275
and vegetation, 94, 103–104, 134, 191–92, 260, 284
fish, 22, 42, 83, 100, 122, 124, 148, 165, 166, 177, 182, 192–93, 222, 243
fitness, 223
flies. See Diptera
floristics (higher plants)
Africa, central tropical, 105
Alaska, 93
Asia, southeast, 102
Borneo, 102
Brazil, 101
California, 96
China, 97
Ethiopia, 105
France, 96
Germany, 96
Greece, 98
Madagascar, 107
Mediterranean floras, 98–99, 134
Mesoamerica, 99
New Zealand, 108
Nigeria, 105
Norway, 93
Panama, 36
Turkey, 98
United States and Canada, 93, 95, 124
flowering plants (Angiosperms), 41–42, 186–90
advance in global biodiversity, 189, 216
and human evolution, 248
numbers (see floristics)
See also double fertilization; phenology
food
in animal nutrition, 143–44, 285
in ecological levels, 148
and human agriculture, 186–87, 265–68
forests
Dipterocarp, 102
igapo, 100
tropical wet (rain forest), 22, 79, 102, 104, 117, 143, 149–50, 156, 189–90, 216
varzea, 100
fossil fuels, 273–75, 286, 288–89, 291, 294, 296–98, 303, 305, 307, 310
fossil record. See paleontology
frogs. See amphibians
fruit, 77, 102, 104, 165, 186, 191, 266. See also figs
fruit fly (Drosophila melanogaster), 52, 77, 109, 137, 160, 211, 212
fungi, 47, 67, 148, 152, 160–62, 164–65, 178, 181, 207, 230, 260, 281
genes
exchange in speciation, 72
“fossils” in genome, 219
horizontal gene transfer, 52
transposons (jumping), 221
genera. See genus
genetic
protocols in development, 40, 251–52
replication of information, 46
genomes, 60, 66–67, 189, 208, 212–14, 219, 252, 295
genus (taxonomic) 8, 74–75, 73–84
geology
continental stability, 15
local disruption, 150
time scale, 170
See also plate tectonics
Glossopteris fossil flora, 120–21
God. See intelligent design
Goldilocks orbit. See Earth: orbit
gorillas, 18, 104, 132, 247–49, 253, 255
grass, family, 30, 42, 186, 266, 284
grasshoppers, 31–32, 34, 37, 154
grasslands, 42, 76, 79, 90, 92–95, 97, 101, 130, 134, 191, 192, 231, 256, 265, 284, 313
African, 104–106, 142, 248, 292
greenhouse gases, 14–16, 264, 307
Haldane, J. B. S, 25
haploid, 63, 84, 177, 185, 214–15
endemic species, 77–78, 86, 109, 137
herbivores, 91, 116, 140–54, 167–68, 184, 191, 233, 238, 285
hierarchy, taxonomic, 8–9, 74, 202
Himalayan Mountains. See under mountains
history. See paleontology
Homo neanderthalensis, 74, 244, 258
Homo sapiens. See humans
horses, 76–77, 138, 153, 246, 259
hotspots (biodiversity), 97, 99, 101, 125–27, 130, 132–34
Hughes, Norman, 198
humans
development (ontogeny) 40, 213, 250–52
evolution and origins of, 18, 73–74, 105, 244–48
exploratory voyages, 272
genetics of, 73
intelligence, 235, 243, 250, 252–55, 285
metallurgy, 269
optimism, 298–99, 308, 312–13, 315
population explosion, 301–304, 313
hybridization, 72, 75, 77, 79, 80, 81, 83
Hymenoptera. See ants; bees; wasps
ice ages, 19, 78, 97, 125, 173–74, 197, 227, 253, 256, 263, 265, 288
Industrial Revolution, 239, 273–75, 289, 293, 296, 300, 315
information (human), 202, 268, 291–96, 300, 305, 312
insects
in forest canopy, 36
giant fossils, 38
holometabolous, 28, 32, 37, 38
origin, 41
smallest, 36
intelligent design, 18, 69–70, 237, 240, 271, 273
intertropical convergence zone, 14
invasive species, 85, 109, 168
iridium anomaly, 195
islands, 21, 77–79, 84, 98, 110, 137, 139, 227. See also individual islands
kingdom (taxonomic), 9
Lamarck, Jean-Baptiste, 219, 260
Lane, Nick, 60
languages (human), 249, 253, 255–56, 260, 286–87, 294
latitudinal species diversity, 112–16
legume family (Fabaceae), 42, 163–64, 187, 266
Lepidoptera, 28, 31, 37–28, 40, 96, 101, 106, 113, 114, 118, 131, 153, 154, 224, 304
life
history of (see chapter 7)
multicellular, 281
life zones. See biomes
liverworts, 63, 91–93, 117, 130, 144, 178–79, 182, 184–85
Madagascar, 72, 107–108, 127, 137, 138–39, 227
endemic species, 107
malaria, 82
Malthus, Thomas, 303
mammals
in Africa, 105
in Costa Rica, 128
in Madagascar, 107
parental investment, 199
placental, 232
marine life, 15, 20–21, 40–41, 48, 89, 92, 165, 176–77, 194, 196, 200–201, 240, 241, 243
meiosis, 62–64, 67, 77, 85, 177, 214–15, 280
Mesozoic, 197
microbes, 45, 52, 55, 155–160, 164, 208, 226, 233
Milky Way (galaxy), 17, 312, 314
mitochondria, 59–60, 62, 67, 202, 206–207, 220, 234, 278, 280–81
monkeys. See primates
Moon, 12–14, 171, 293, 305, 313
mosquitoes, 34–35, 41, 82, 92, 164
moths. See Lepidoptera
mountains, 11, 15–16, 22, 76, 81, 83, 96–99, 114, 201
Andes, 100–101, 130–32, 145, 150
Appalachians, 95
Murphy's Law, 46, 203, 218, 219
mutations, 51, 65, 76, 83, 203, 207, 218, 220–22, 287
mycorrhizae, 161
natural selection, 19, 51, 69–70, 147, 156, 165, 169, 182, 203, 207, 213, 218, 234, 239, 240, 287, 298
and ecological divergence, 80–84
and group selection, 230, 286–87
and sexual choice, 86
Nearctic realm, 93
Neolithic demographic transition, 267
Neotropics. See biomes: American tropics
nervous systems, 211, 222, 242
niche, 58, 83, 115, 139, 165, 168, 199, 216, 228, 234, 240
nitrogen
fixation, 49, 163–64, 264, 305
molecular, 49
nomenclature, biological, 74
nucleus, cellular, 56, 59, 61–63, 67, 185, 187, 206, 219–20, 280
nutrition. See food
Odonata. See grasshoppers
orchids, 42, 105, 109, 132, 144, 186, 191, 216
origin
of species (see chapter 3)
Palearctic realm, 93
Paleontology
biodiversity over time, 20, 197–99, 238
eons, 172
Pangaea, 121
plant species increase, 198
See also Cambrian explosion; Ediacaran biota; extinction: major events
Paleozoic, 197
Paley, William, 69
palms
in Costa Rica, 150
distribution, 113
in Singapore, 105
Panama, 36, 96, 106, 115, 129, 143, 151
Pangaea, 121
parasites, 47, 65, 67, 148–50, 152, 155, 167
pathogens, 65, 67, 148, 161, 167–68, 254, 265, 280, 312
and biodiversity, 152–53, 155, 224
and disease, 30, 45, 51, 54, 87, 109, 115–16, 155, 160, 227–28, 267, 271–72
and ecological niche, 82
photosynthesis, 10–11, 20–21, 48–49, 102, 113, 161–62, 175, 179, 190–91, 196, 202, 205–207, 268, 275, 279–80, 287, 299
phytomass, 21
Plantae (kingdom), 9
plants
alternation of generations, 215
cultivation (see agriculture)
defense against herbivores, 153, 155
dormancy, 167
increasing numbers over time, 198
leaves in evolutionary history, 190, 216
numbers (see floristics)
pioneers, 145
terrestrial, 177–180, 183, 214–15, 282
See also flowering plants; pollination
Platanus, 79
plate tectonics
and atmosphere stability, 15–16, 173
and biodiversity, 120–23, 150, 201
pollen, 79, 85, 158, 185, 186, 187, 190, 198, 224, 282
pollination
by animals, 37, 156–57, 189, 190, 216, 284
by wind, 72, 144, 156, 185, 188
population explosion, human, 301–304, 313
predation
and arms races, 153, 167, 224–26
and local biodiversity, 142, 148, 152, 155
of plant seeds, 153
primates
biogeography, 138
brain size, 246
printing, by metal type, 272, 288, 294
progress (as a concept), 204, 239–42, 308, 313
prokaryotes, 56
Quercus. See oaks
rain forests. See forests
ranks, taxonomic, 9
Rapoport's rule, 115
Red Queen Hypothesis, 223–24, 226, 267
religious traditions, 18, 235, 270, 299, 311
reproduction, 50–51, 61–65, 155, 164–68, 184, 203, 218, 220, 279, 287
respiration, 38, 176, 206–207, 280, 282
RNA (ribonucleic acid), 46, 54–56, 163, 212–13, 219–20, 278. See also DNA
science
as explanatory strategy, 7, 17–19, 69
revolutions in, 69, 121, 238, 271
seed bank, 167
seed plants, 95, 184–85, 188, 198, 215, 224
selection. See natural selection
sex
evolutionary advantage, 63–66, 220
gender roles in humans, 255–57, 268
sexual selection, 86
soil, 21, 30, 45, 82, 91, 103, 105, 135, 143, 152, 160–61, 163, 183–84, 226, 231, 299–300, 308
and human success, 267, 292, 307
solar system, 12–14, 16, 19, 171–72, 225, 314
Spartina (cord grass), 85
speciation
in cold climates, 115
in East African lake fishes, 83
by ecological differentiation, 80–84
by geographic isolation, 76–80
in the Hawaiian islands, 78, 109, 137
by hybrid inferiority, 80
over time, 136
in peripheral populations, 80–81
by sexual selection, 86
species
concepts (definitions), 8–9, 53, 71–72, 76
endemics (see endemism)
new names (nomenclature), 10
new species (see speciation)
recognition, 73
richness (see chapters 4 and 5)
speciation (see chapter 3)
species numbers, 8, 11, 20, 42, 76, 89
over geological time, 20, 197–98, 238
maintenance (see chapter 5)
stasis, evolutionary, 58, 203, 241
stromatolites, 172
energy from (see photosynthesis)
sunflower family, 42
survival
by dispersal and dormancy, 164–68
by reproduction, 61–63, 164–66
symbioses
in animal digestion, 160, 231, 233
bacterial commensals, 52, 164, 237
endosymbiosis (within cell), 59–61
systematics, cladistics, 221
taiga (northern forest), 93, 133, 188
taxonomy
folk, 8
synonymous names, 75
technology, human, 138, 227, 239, 269–70, 272, 273–74, 288, 293–98, 305
temperate regions, 14, 94–96, 113–14
terrestrial
early flora, 282
environments (see chapter 4)
species richness, 198
vertebrates (see tetrapods)
termites, 160, 164, 181, 229, 231
tetrapods (land vertebrates), 37, 183, 192–93, 222, 283
thermodynamics, second law of, 204, 279, 296
trees
in forests (see forests)
numbers and area, 117
numbers and latitude, 116
tribalism, human, 254–57, 285–86, 292
trilobites, 174
trophic levels. See under ecology
type specimen (nomenclature), 25, 75
unemployment (human), 303–304, 312
Vertebrata (phylum), 9
vision, 138–39, 211–12, 219, 222, 246–47, 249, 252, 284
Wallace, Alfred Russel, 80, 82, 83, 122, 260
Wallace's Line (zoogeography) 103, 122–23
stress (drought), 113, 136, 152, 254, 265, 310
weeds, 188
Wilson, Edward O, 130, 168, 254, 292
Woese, Carl, 54
Yellowstone National Park, 127, 154–55
Zero Force Evolutionary Law, 203
zoogeographic realms