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Index
Cover
Frontmatter
1. Emergence of Standard Algorithms
1. What’s Behind Blast
2. Forty Years of Model-Based Phylogeography
3. How to Infer Ancestral Genome Features by Parsimony: Dynamic Programming over an Evolutionary Tree
4. Duplication, Rearrangement and Reconciliation: A Follow-Up 13 Years Later
5. The Genesis of the DCJ Formula
2. New Lights on Current Paradigms
6. Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
7. Rearrangements in Phylogenetic Inference: Compare, Model, or Encode?
8. Status of Research on Insertion and Deletion Variations in the Human Population
9. A Retrospective on Genomic Preprocessing for Comparative Genomics
10. The Emperor Has No Caps! A Comparison of DCJ and Algebraic Distances
3. Promising Directions
11. Fractionation, Rearrangement, Consolidation, Reconstruction
12. Error Detection and Correction of Gene Trees
13. The Potential of Family-Free Genome Comparison
14. Genetic History of Populations: Limits to Inference
Backmatter
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