[How 01] • Circos Data Visualization How-to by VISUALIZATION, CIRCOS DATA -- Read -- Imperial Library of Trantor

Index

Circos Data Visualization How-to

Circos Data Visualization How-to Credits About the Author About the Reviewer www.PacktPub.com

Support files, eBooks, discount offers and more

Why Subscribe? Free Access for Packt account holders

Preface

What this book covers What you need for this book Who this book is for Conventions Reader feedback Customer support

Downloading the example code Downloading the color images of this book Errata Piracy Questions

1. Circos Data Visualization How-to

Installing Circos on Windows 7 (Must know)

Getting ready How to do it... Running an example

Do I need a 64-bit or a 32-bit version? I want Circos, what is Perl? What are Perl modules? I installed Perl, but perl -v does not work! Installing Circos under Cygwin

Installing Circos on Linux or Mac OS (Must know)

Getting ready How to do it... Running an example Relating to the rest of this book

Perl is not installed on my Linux distribution Perl modules not installing correctly

Creating the first Circos diagram (Must know)

Getting ready How to do it... There's more...

Links without ribbons Editing the image for a final product

Customizing Circos layout (Should know)

Getting ready How to do it... There's more...

Formatting links with rules (Become an expert)

Getting ready How to do it... How it works... There's more...

Applying multiple rules Additional rule conditions

Reducing links with bundlelinks tool (Become an expert)

How to do it... How it works...

Adding data tracks – heatmap (Become an expert)

Getting ready How to do it... How it works... There's more...

Predefined Colorbrewer colors Custom color codes

Adding data tracks – histogram (Become an expert)

Getting ready How to do it... How it works... There's more...

Relative sizing with radius